The Computational Molecular Biology program is the cooperative effort of ten outstanding research departments at the University of Washington and the Fred Hutchinson Cancer Research Center. Benjamin Vernot is lead author on paper in.

Raquo; Postdoc opening to learn about antibody development during HIV superinfection. Raquo; Per-sample immunoglobulin germline inference from B cell receptor deep sequencing data. Unsurprisingly, aligning sequences one by one to the. In this particular case, the starting point was the stunnin.

Molecular Mechanisms and Design Principles. Posted 14 Jun 2015 by rasi. Setting up my lab remotely. Posted 01 May 2015 by rasi.

Welcome to the Stenglein lab at Colorado State University. The lab is just getting underway and we are looking to recruit students, postdocs, and technicians to join. Posted 06 Jul 2015 by. Come join the fun! Posted 01 Oct 2014 by. Past, present, and future of arenavirus taxonomy.

Studies cell differentiation, reprogramming, and other transitions between stable or metastable cellular states. We also study the role of cell-cell communication in governing these processes. We aim to identify genes that control cellular transitions, primarily using single-cell genomics. Integrative Analyses of Human Reprogramming Reveal Dynamic Nature of Induced Pluripotency.

However, doing so for. Pair of labeled trees is a waste, because if we just relabel the two trees in the same way, we will get the same result. So, how many computations do we actually need to do? The answer is rath.

We are using infectious disease genomics to investigate the interaction between the human host and highly pathogenic viruses such as Ebola and Lassa. Our goal is to understand how these viruses evolve in response to selection pressures imposed by the host immune system. Using a combination of computational biology, experimentation, and field work in West Africa our hope is to change the way we develop vaccines and therapeutics for these and other emerging pathogens.

About 3 years ago, a novel respiratory disease was diagnosed in Saudi Arabia and called Middle East Respiratory Syndrome. Sequences of recently isolated viruses from China and Korea have been deposited in genbank this week. To track the spread and evolution of the virus, we adapted nextflu. This is now live at mers. I have been working .

Real-time tracking of seasonal influenza virus evolution in humans. Input mutations as position amino acid, i. Clades as clade name, i. By default, positions are interpreted as residues in HA1. Alternatively, simply click on variable positions in the graph below. Use the drop down menu. To color viruses by number of epitope mutations.